set stringsAsFactors = FALSE in get.attribute.df
[loomr.git] / R / loom.R
2018-03-21 Christoph Hafemeisterset stringsAsFactors = FALSE in get.attribute.df
2018-03-21 Christoph HafemeisterModify get.attribute.df to return all attributes by...
2018-03-21 Paul HoffmanHave create, combine, and subset.loom automatically...
2018-03-21 Paul HoffmanRemove redundant code
2018-03-20 Paul HoffmanBug fix in subset.loom
2018-03-19 Paul HoffmanFixes to apply, field loading, and subset.loom; new...
2018-03-19 Paul HoffmanChanges to warning messages in create
2018-03-19 Paul HoffmanProvide S4 Matrix methods to loomR for data manipulation
2018-03-16 Paul HoffmanFixes to loom$apply and subset.loom
2018-03-16 Paul HoffmanMinor fix in loom
2018-03-15 Paul HoffmanUpdate documentation, change the way apply creates...
2018-03-14 Paul HoffmanUpdate documentation
2018-03-08 Paul HoffmanAdd ability to transpose input data
2018-03-05 Paul HoffmanMerge branch 'master' into develop
2018-03-01 Paul HoffmanAdd loomR::combine
2018-02-28 Paul HoffmanMore updates
2018-02-27 Paul HoffmanMerge branch 'develop' of
2018-02-27 Paul HoffmanStart working on a combine function
2018-02-23 Andrew ButlerMerge branch 'develop' of
2018-02-23 Andrew Butlerclose progress bar connections
2018-02-22 Paul HoffmanChange validation to add missing groups; update documen...
2018-02-09 andrewwbutlerallow add.attribute to take a data.frame - convert...
2018-02-09 Paul HoffmanUpdate documentation some more
2018-02-09 Paul HoffmanChange add.layers to support streaming sparse matrices
2018-02-08 Paul HoffmanFix documentation, add proper support for R sparse...
2018-02-07 andrewwbutlerremove extra comma, rerun docs
2018-02-07 Paul HoffmanChunk loomR::create
2018-01-31 Paul HoffmanMerge branch 'develop' of
2018-01-31 Paul HoffmanAdd support for multidimensional row- and column-attributes
2018-01-30 Paul HoffmanMerge pull request #4 from ChristophH/master
2018-01-30 Paul HoffmanMerge pull request #5 from ChristophH/develop
2018-01-30 Christoph Hafemeisterallow more flexible results shapes when mapping a function
2018-01-30 Christoph HafemeisterMerge branch 'master' into develop
2018-01-09 ChristophHfix bug in create when checking chunk.dims length
2018-01-03 Paul HoffmanUse logging functions, change error messages, expand...
2018-01-03 Paul HoffmanFixes to add.cells, start add.loom
2018-01-02 Paul HoffmanMinor fix to subset.loom, added more to add.cells
2017-12-19 Paul HoffmanAdd stuff for add.cells
2017-12-13 Paul HoffmanFix display messages
2017-12-13 Paul HoffmanMade changes and tested them, subset.loom works now...
2017-12-13 Paul HoffmanR doesn't evaluate variables in list creation...
2017-12-13 Paul HoffmanI should fix create at some point...
2017-12-13 Paul HoffmanIf you're happy and you know it, syntax error!
2017-12-13 Paul HoffmanBecause I can't remember how my methods work...
2017-12-13 Paul HoffmanBug fix in create
2017-12-13 Paul HoffmanAdd some defaults to subset.loom
2017-12-13 Paul HoffmanCleanup and reorganize code
2017-12-12 Paul HoffmanAdd subset function
2017-12-12 Paul HoffmanBegan support for selective-chunking in apply
2017-12-12 Paul HoffmanSlight refactoring
2017-12-12 Andrew Butleradd ability to extract a dataframe of multiple row_attr...
2017-11-16 Paul HoffmanFixes to batch iteration. Allow skipping of validation...
2017-11-15 Paul HoffmanSyntax error
2017-11-14 Paul HoffmanBeginnings of add cells method
2017-11-14 Paul HoffmanSyntax error
2017-11-14 Paul HoffmanMerge branch 'master' of
2017-11-14 Paul HoffmanUse characters rather than 'versions' to store version...
2017-11-09 Paul HoffmanAdd method to clean up object once garbage collected
2017-11-09 Paul HoffmanUpdate documentation
2017-11-09 Paul HoffmanFixed issues with chunking and iterating
2017-11-09 Paul HoffmanUpdate issues with chunk iteration
2017-11-09 Paul HoffmanFix issue with adding attributes
2017-11-09 Paul HoffmanAdd overwrite to add layer and add atribute
2017-11-09 Paul Hoffmanchange margin to 1 for genes and 2 for cells
2017-11-08 Paul HoffmanCleanup namespace
2017-11-08 Paul HoffmanClean code
2017-11-08 Paul HoffmanFixes and stuff
2017-11-07 Paul HoffmanCheck for read-only mode, start add.cells/add.columns
2017-11-06 Paul HoffmanUpdate documentation
2017-11-06 Paul HoffmanGet apply working (I think), fix some stuff with map
2017-11-03 Paul HoffmanExpand apply, update documentation
2017-11-03 Paul HoffmanFinished map and made it an R6 method
2017-11-03 Paul HoffmanFIx issues where iterators and itertools weren't loadin...
2017-11-02 Paul HoffmanMap designed for R6(ish)
2017-11-01 Paul HoffmanClean code, update documentation
2017-11-01 Paul HoffmanFix issues with create, further progress on batching
2017-10-31 Paul HoffmanMerge branch 'master' of
2017-10-31 Paul HoffmanBegun implementation of batch.scan
2017-10-31 Rahul Satijafirst shell for CreateLoomFromSeurat
2017-10-31 Paul HoffmanFinish layer adding
2017-10-31 Paul HoffmanUpdate how layers are added to a loom object
2017-10-31 Paul HoffmanFix issue where the H5D for '/matrix' wasn't being...
2017-10-31 Paul HoffmanAllow method chaining
2017-10-31 Paul HoffmanUpdate documentation
2017-10-30 Paul Hoffmancreate works
2017-10-30 Paul HoffmanConnect works!
2017-10-30 Paul HoffmanExpand documentation
2017-10-30 Paul HoffmanExpand methods
2017-10-30 Paul HoffmanUpdates to the initialize method and add functionality...
2017-10-27 Paul HoffmanAdd to create and start framework support framework...
2017-10-27 Paul HoffmanAdd some stuff to create
2017-10-27 Paul HoffmanRe-export validateLoom and start create function
2017-10-27 Paul HoffmanInital version of loom in R6
2017-10-27 Paul HoffmanUpdates to documentation
2017-10-26 Paul HoffmanUpdate documentation, flesh out validateLoom
2017-10-23 Paul HoffmanMerge branch 'master' of
2017-10-23 Paul HoffmanAdd intial validation function
2017-10-21 Rahul Satijaadded first versions of connect and map functions
2017-10-20 Paul HoffmanInitialization function
2017-10-20 Paul HoffmanMinor fixes